POLYMORPHISM OF CHLOROPLAST DNA REGIONS OF SOME SPECIES FROM SCORPIRIS SPACH SUBGENERA (IRIDACEAE JUSS.)

Authors

  • E.A. Ortikov Institute of Botany of the Academy of Sciences of the Republic of Uzbekistan
  • K.B. kizi Alieva Institute of Botany of the Academy of Sciences of the Republic of Uzbekistan
  • S.B. kizi Khudaiberdieva Institute of Botany of the Academy of Sciences of the Republic of Uzbekistan
  • T.N. Asatullayev Institute of Botany of the Academy of Sciences of the Republic of Uzbekistan
  • M.B. kizi Kurbanalieva Institute of Botany of the Academy of Sciences of the Republic of Uzbekistan
  • F.U. Mustafina Institute of Botany of the Academy of Sciences of the Republic of Uzbekistan

Keywords:

polymorphizm, plastome, Scorpiris.

Abstract

The information about the research results of the polymorphic regions of chloroplast
genomes of 4 endemic species from Scorpiris subgenera, namely Juno austrotschatkalica Tojibaev,
F. Karim, et Turgunov, Juno pseudocapnoides Rukšāns, Juno victoris (F.O. Khass., Khuzhan. and
Rakhimova) M.B. Crespo, Mart.-Azorín and Mavrodiev and Iris hippolyti (Vved.) Kamelin, is
presented in this article. The research aimed to detect the most variable regions to use for specific
primer design.

References

Goldblatt P (1990) Phylogeny and classification of the Iridaceae. Ann Missouri Bot Gard 77: 607–627.

Goldblatt P, Manning JC (2008) The Iris family. Natural history and classification. Timber Press Incl, London 290.

Goldblatt P (1991) An overview of the systematics, phylogeny and biology of the southern African

Iridaceae. Contributions from the Bolus Herbarium 13:1-74.

Reeves G, Chase MW, Goldblatt P, Rudall P, Fay MF, Cox AV, Lejeune B, Souza-Chies T (2001)

Molecular systematics of Iridaceae: evidence from four plastid DNA regions. Am J Bot 88:2074-2087.

https://doi.org/10.2307/3558433

Goldblatt P, Manning JC, Rudall P (1998) Iridaceae. In: Kubitzi, K. (Ed.) The families and genera

of flowering plants. Springer, Berlin, Heidelberg and New York 295–333. http://dx.doi.org/10.1007/978-3- 662-03533-7_37

Crespo MB, Martinez-Azorin M, Mavrodiev E (2015) Can a rainbow consist of a single colour? A

new comprehensive generic arrangement of the ‘Iris sensu latissimo’ clade (Iridaceae), congruent with

morphology and molecular data. Phytotaxa 232(1):1-78. https://doi.org/10.11646/phytotaxa.232.1.1

Mavrodiev EV, Martínez-Azorín M, Dranishnikov P, Crespo MB (2014) At least 23 genera instead

of one: The case of Iris L. s.l. (Iridaceae). PLOS One 9(8):e106459. https://doi.org/10.1371/journal. pone.0106459

Wilson CA (2011) Subgeneric classification in Iris re-examined using chloroplast sequence data.

Taxon 60:27–35. https://doi.org/10.1002/tax.601004

Lazkov GA, Sennikov AN, Koichubekova GA, Naumenko AN (2014) Taxonomic corrections and new

records in vascular plants of Kyrgyzstan. Memoranda Societatis pro Fauna et Flora Fennica 90:91–110.

Mathew B. (1989) The Iris, ed. 2. Timber Press, Portland 215.

Tillie N, Chase MW, Hall T (2001) Molecular studies in the genus Iris L.: a preliminary study.

Annali di Botanica (Roma) 1:105–112. https://doi.org/10.4462/annbotrm-9068

Wilson CA (2004) Phylogeny of Iris based on chloroplast matK gene and trnK intron sequence data.

Mol Phylog Evol 33:402–412. http://dx.doi.org/10.1016/j.ympev.2004.06.013

Wilson CA (2009) Phylogenetic relationships among the recognized series in Iris section Limniris.

Syst Bot 34:277–284. http://dx.doi.org/10.1600/036364409788606316

Mavrodiev EV (2010) Is there an alternative treatment of including genus Belamcanda to the genus

Iris (Iridaceae)? In: Shmakov AI. (Ed.) Problems of botany of South Siberia and Mongolia. Proceedings

of the 9th International Scientific and Practical Conference (Barnaul, 25–27 October 2010):148–155. [in

Russian].

Khassanov FO, Rakhimova N (2012) Taxonomic revision of the genus Iris L. (Iridaceae Juss.) for

the flora of Central Asia. STAPFIA 97:174–179.

Souza-Chies TT, Bittar G, Nadot S, Carter L, Besin E, Lejeune B (1997) Phylogenetic analysis of

Iridaceae with parsimony and distance methods using the plastid gene rps4. Plant Syst Evol 204:109–123.

https://doi.org/10.1007/BF00982535

Ikinci N, Hall T, Lledo MD, Clarkson JJ, Tillie N, Seisums A, Saito T, Harley M, Chase MW

(2011) Molecular phylogenetics of the Juno irises, Iris subgenus Scorpiris (Iridaceae), based on six plastid

markers. Bot J Linn Soc 167:281–300. http://dx.doi.org/10.1111/j.1095-8339.2011.01176.x 106 Известия НАН КР, 2022, №7

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz

S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A (2012) Geneious Basic: An integrated and

extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics

(12):1647-1649. https://doi.org/10.1093/bioinformatics/bts199

Darling AE, Mau B, Perna NT (2010) Progressive Mauve: Multiple genome alignment with gene

gain, loss and rearrangement. PLoS ONE 5(6): e11147. http://dx.doi.org/10.1371/journal.pone.0011147

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular volutionary

Genetics Analysis Version 6.0. Mol Biol Evol 30(12):2725–2729. http://dx.doi.org/10.1093/molbev/mst197

Librado P, Rozas J (2009) DnaSP v5: A software for comprehensive analysis of DNA polymorphism

data. Bioinformatics 25(11):1451-1452. http://dx.doi.org/10.1093/bioinformatics/btp187

Benson G. (1999) Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res

(2):573–580. https://doi.org/10.1093/nar/27.2.573

Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R (2001) REPuter: The

manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res 29(22):4633-4642. http://

dx.doi.org/10.1155/2008/41269610.1093/nar/29.22.4633

Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic

Acids Res 31(13):3406–3415. http://dx.doi.org/10.1093/nar/gkg595

Published

2022-10-12